(Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/TeX.pool.ltxml... (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/eTeX.pool.ltxml... 0.00 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/pdfTeX.pool.ltxml... 0.00 sec) 0.05 sec) latexmlc (LaTeXML version 0.8.8) invoked as [/usr/local/bin/latexmlc --path=/home/wva/latex-jats/src/latexml --destination /tmp/tmp9w1zznhv.xml --format=xml /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex --log=/home/wva/latex-jats/output/CCR2025.1.8.PARR/convert/logs/CCR2025.1.8.PARR.latexml.log] processing started Fri Apr 3 13:34:21 2026 (Digesting TeX main... (Processing content /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex... (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml... (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/textcomp.sty.ltxml... 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(Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/color.sty.ltxml... 0.00 sec) 0.01 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/pdflscape.sty.ltxml... (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/lscape.sty.ltxml... 0.00 sec) 0.01 sec) Warning:missing_file:tabu Can't find binding for package tabu at main.tex; line 13 col 11 - line 13 col 11 Anticipate undefined macros or environments search paths are /home/wva/latex-jats/examples/CCR2025.1.8.PARR, /home/wva/latex-jats, /home/wva/latex-jats/src/latexml, /home/wva/latex-jats In Core::Definition::Constructor[\usepac... /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml; line 879 Info:dependencies:dependencies Loading dependencies for /usr/share/texlive/texmf-dist/tex/latex/tabu/tabu.sty: varwidth,delarray,linegoal at main.tex; line 13 col 11 - line 13 col 11 (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/varwidth.sty.ltxml... 0.00 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/threeparttable.sty.ltxml... 0.00 sec) Warning:missing_file:threeparttablex Can't find binding for package threeparttablex at main.tex; line 15 col 11 - line 15 col 11 Anticipate undefined macros or environments In Core::Definition::Constructor[\usepac... /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml; line 879 Info:dependencies:dependencies Loading dependencies for /usr/share/texlive/texmf-dist/tex/latex/threeparttablex/threeparttablex.sty: environ at main.tex; line 15 col 11 - line 15 col 11 (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/ulem.sty.ltxml... 0.00 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/makecell.sty.ltxml... (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/makecell/makecell.sty... Info:ignore:\makecell Ignoring redefinition (\newcommand) of '\makecell' at makecell.sty; line 28 col 0 - line 28 col 63 0.02 sec) 0.03 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/listings.sty.ltxml... (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg... 0.01 sec) 0.04 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/xcolor.sty.ltxml... 0.02 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/tabularx.sty.ltxml... 0.00 sec) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/siunitx.sty.ltxml... (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/expl3.sty.ltxml... (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/expl3.lua.ltxml... 0.00 sec) (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty... (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex... Package: expl3 2022-01-21 L3 programming layer (code) (Loading /usr/local/share/perl/5.34.0/LaTeXML/Package/etex.sty.ltxml... 0.00 sec) 14.43 sec) (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def... 0.09 sec) 14.59 sec) 14.60 sec) 14.67 sec) Info:latex:(csquotes) Package csquotes Info: Allocating character " at main.tex; line 109 col 39 - line 109 col 39 Info:latex:(csquotes) Package csquotes Info: Checking for multilingual support.. at main.tex; line 113 col 0 - line 113 col 16 Info:latex:(csquotes) Package csquotes Info: ... found 'babel' package at main.tex; line 113 col 0 - line 113 col 16 Info:latex:(csquotes) Package csquotes Info: Adjusting default style at main.tex; line 113 col 0 - line 113 col 16 Info:latex:(csquotes) Package csquotes Info: Redefining alias 'default' -> 'english' at main.tex; line 113 col 0 - line 113 col 16 Info:latex:(csquotes) Package csquotes Info: Making character " active at main.tex; line 113 col 0 - line 113 col 16 (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/siunitx/siunitx-abbreviations.cfg... 0.01 sec) (Processing definitions /usr/share/texlive/texmf-dist/tex/latex/siunitx/siunitx-binary.cfg... 0.00 sec) Error:undefined:{tabu} The environment {tabu} is not defined. at main.tex; line 166 col 12 - line 166 col 12 Next token is T_SPACE[ ] ( == T_SPACE[ ]) In Core::Definition::Expandable[\begin {}] /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml; line 182 <= Core::Gullet[@0x6431ae7defa0] <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= ... Warning:expected: Missing number (Dimension), treated as zero. at main.tex; line 166 col 28 - line 166 col 28 while processing \linewidth Next token is T_BEGIN[{] ( == T_BEGIN[{]) In Core::Gullet[@0x6431ae7defa0] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 166 col 28 to line 166 col 28 Error:unexpected:\noalign \noalign cannot be used here at main.tex; line 168 col 1 - line 168 col 1 In Core::Definition::Primitive[\noalign] /usr/local/share/perl/5.34.0/LaTeXML/Package/TeX.pool.ltxml; line 2873 <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= Core::Stomach[@0x6431ae7e3228] <= ... Error:unexpected:\endgroup Attempt to close non-boxing group at main.tex; line 175 col 0 - line 175 col 10 current frame is boxing group due to T_CS[\noalign] main.tex; line 168 col 1 - line 168 col 1 In Core::Stomach[@0x6431ae7e3228] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 175 col 0 to line 175 col 10 <= Core::Definition::Primitive[\endgroup] <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= ... Error:unexpected:\end{table} Can't close environment table; at main.tex; line 179 col 0 - line 179 col 11 Current are: tabu main.tex; line 166 col 13 - line 166 col 13 table main.tex; line 160 col 0 - line 160 col 13 document main.tex; line 113 col 0 - line 113 col 16 In Core::Definition::Constructor[\end{ta... /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml; line 3574 <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= Core::Stomach[@0x6431ae7e3228] <= ... Error:unexpected:\end{table} Attempt to close boxing group at main.tex; line 179 col 0 - line 179 col 11 current frame is non-boxing group due to T_CS[\begingroup] main.tex; line 166 col 13 - line 166 col 13 In Core::Stomach[@0x6431ae7e3228] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 179 col 0 to line 179 col 11 <= Core::Definition::Constructor[\end{ta... <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= ... Warning:expected: Missing number (Dimension), treated as zero. at main.tex; line 196 col 28 - line 196 col 28 while processing \linewidth Next token is T_BEGIN[{] ( == T_BEGIN[{]) In Core::Gullet[@0x6431ae7defa0] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 196 col 28 to line 196 col 28 Error:unexpected:\noalign \noalign cannot be used here at main.tex; line 198 col 1 - line 198 col 1 In Core::Definition::Primitive[\noalign] /usr/local/share/perl/5.34.0/LaTeXML/Package/TeX.pool.ltxml; line 2873 <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= Core::Stomach[@0x6431ae7e3228] <= ... Error:unexpected:\endgroup Attempt to close non-boxing group at main.tex; line 208 col 0 - line 208 col 10 current frame is boxing group due to T_CS[\noalign] main.tex; line 198 col 1 - line 198 col 1 In Core::Stomach[@0x6431ae7e3228] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 208 col 0 to line 208 col 10 <= Core::Definition::Primitive[\endgroup] <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= ... Error:unexpected:\end{table} Can't close environment table; at main.tex; line 212 col 0 - line 212 col 11 Current are: tabu main.tex; line 196 col 12 - line 196 col 12 table main.tex; line 188 col 0 - line 188 col 13 tabu main.tex; line 166 col 13 - line 166 col 13 table main.tex; line 160 col 0 - line 160 col 13 document main.tex; line 113 col 0 - line 113 col 16 In Core::Definition::Constructor[\end{ta... /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml; line 3574 <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= Core::Stomach[@0x6431ae7e3228] <= ... Error:unexpected:\end{table} Attempt to close boxing group at main.tex; line 212 col 0 - line 212 col 11 current frame is non-boxing group due to T_CS[\begingroup] main.tex; line 196 col 12 - line 196 col 12 In Core::Stomach[@0x6431ae7e3228] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 212 col 0 to line 212 col 11 <= Core::Definition::Constructor[\end{ta... <= Core::Stomach[@0x6431ae7e3228] <= Core::Definition::Primitive[Begin] <= ... Warning:expected: Missing number (Dimension), treated as zero. at main.tex; line 232 col 0 - line 232 col 83 while processing \lx@longtable@bindings Next token is T_OTHER[(] ( == T_OTHER[(]) more: \columnwidth- 2\tabcolsep) * \real{0.3500} In Core::Gullet[@0x6431ae7defa0] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 232 col 0 to line 232 col 83 Warning:expected: Missing number (Dimension), treated as zero. at main.tex; line 232 col 0 - line 232 col 83 while processing \lx@longtable@bindings Next token is T_OTHER[(] ( == T_OTHER[(]) more: \columnwidth- 2\tabcolsep) * \real{0.6500} In Core::Gullet[@0x6431ae7defa0] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 232 col 0 to line 232 col 83 (Processing content /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.bbl... 0.85 sec) Warning:unexpected:\end{document} Attempt to end document with open groups, environments or conditionals at main.tex; line 970 col 0 - line 970 col 14 Environment tabu opened by \begingroup main.tex; line 196 col 12 - line 196 col 12 Group opened by { main.tex; line 192 col 0 - line 192 col 11 Environment table opened by \begin{table} main.tex; line 188 col 0 - line 188 col 13 Environment tabu opened by \begingroup main.tex; line 166 col 13 - line 166 col 13 Group opened by { main.tex; line 164 col 0 - line 164 col 11 Environment table opened by \begin{table} main.tex; line 160 col 0 - line 160 col 13 In Core::Definition::Constructor[\end{do... /usr/local/share/perl/5.34.0/LaTeXML/Package/LaTeX.pool.ltxml; line 408 19.98 sec) 20.03 sec) (Building... (Loading compiled schema /usr/local/share/perl/5.34.0/LaTeXML/resources/RelaxNG/LaTeXML.model... 0.00 sec) Error:malformed:ltx:subsubsection isn't allowed in at String; line 1 col 0 - line 1 col 0 Currently in .................. In Core::Document[@0x6431b1b3cb30] Anonymous String; from line 1 col 0 to line 1 col 0 <= Core::Definition::Constructor[\@@numb... <= Whatsit[\@@numbered@section,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:subsection isn't allowed in at main.tex; line 214 col 84 - line 214 col 84 Currently in .................. In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 214 col 84 to line 214 col 84 <= Core::Definition::Constructor[\@@numb... <= Whatsit[\@@numbered@section,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:section isn't allowed in at main.tex; line 223 col 35 - line 223 col 35 Currently in .................. In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 223 col 35 to line 223 col 35 <= Core::Definition::Constructor[\@@numb... <= Whatsit[\@@numbered@section,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:section isn't allowed in at main.tex; line 360 col 31 - line 360 col 31 Currently in .................. In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 360 col 31 to line 360 col 31 <= Core::Definition::Constructor[\@@numb... <= Whatsit[\@@numbered@section,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:section isn't allowed in at main.tex; line 820 col 13 - line 820 col 13 Currently in .................. In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 820 col 13 to line 820 col 13 <= Core::Definition::Constructor[\@@numb... <= Whatsit[\@@numbered@section,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:section isn't allowed in at main.tex; line 867 col 28 - line 867 col 28 Currently in .................. In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 867 col 28 to line 867 col 28 <= Core::Definition::Constructor[\@@numb... <= Whatsit[\@@numbered@section,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:section isn't allowed in at main.tex; line 962 col 0 - line 962 col 26 Currently in .................. In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 962 col 0 to line 962 col 26 <= Core::Definition::Constructor[\thebib... <= Whatsit[\thebibliography] <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:document Closing whose open descendents do not auto-close at main.tex; line 962 col 0 - line 962 col 26 Descendents are ..., ... In Core::Document[@0x6431b1b3cb30] /home/wva/latex-jats/examples/CCR2025.1.8.PARR/main.tex; from line 962 col 0 to line 962 col 26 <= Core::Definition::Constructor[\end{do... <= Whatsit[\end{document}] <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:table Attempt to close , which isn't open Currently in XMLDocument[110164809362352] In Core::Document[@0x6431b1b3cb30] undef <= Core::Definition::Constructor[\begin{... <= Whatsit[\begin{table},undef,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... Error:malformed:ltx:table Attempt to close , which isn't open Currently in XMLDocument[110164809362352] In Core::Document[@0x6431b1b3cb30] undef <= Core::Definition::Constructor[\begin{... <= Whatsit[\begin{table},undef,Core::Lis... <= Core::Document[@0x6431b1b3cb30] <= ... 3.61 sec) (Rewriting... 0.01 sec) (Finalizing... 0.09 sec) Conversion complete: 7 warnings; 19 errors; 1 undefined macro[{tabu}]; 2 missing files[tabu.sty, threeparttablex.sty] (See /home/wva/latex-jats/output/CCR2025.1.8.PARR/convert/logs/CCR2025.1.8.PARR.latexml.log) Status:conversion:2